org.gersteinlab.act
Class BinFileCreator

java.lang.Object
  org.gersteinlab.act.BinFileCreator

public class BinFileCreator
extends java.lang.Object

        This class converts an input signal file into a bin file with a
        specified bin size. The total length of each chromosome is specified in
        the configuration file.
        

Field Summary

static java.lang.String	BIN_BINARY Use the presence of signal as the summary statistic of a bin.
protected static int	BIN_BINARY_ID Use the presence of signal as the summary statistic of a bin.
static java.lang.String	BIN_MAX Use the maximum signal as the summary statistic of a bin.
protected static int	BIN_MAX_ID Use the maximum signal as the summary statistic of a bin.
static java.lang.String	BIN_MEAN Use the mean signal as the summary statistic of a bin.
protected static int	BIN_MEAN_ID Use the mean signal as the summary statistic of a bin.

Constructor Summary

BinFileCreator()

Method Summary

static void

main(java.lang.String[] argv)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

BIN_MEAN

public static final java.lang.String BIN_MEAN

Use the mean signal as the summary statistic of a bin.

See Also:

Constant Field Values

BIN_MAX

public static final java.lang.String BIN_MAX

Use the maximum signal as the summary statistic of a bin.

See Also:

Constant Field Values

BIN_BINARY

public static final java.lang.String BIN_BINARY

Use the presence of signal as the summary statistic of a bin.

See Also:

Constant Field Values

BIN_MEAN_ID

protected static final int BIN_MEAN_ID

Use the mean signal as the summary statistic of a bin.

See Also:

Constant Field Values

BIN_MAX_ID

protected static final int BIN_MAX_ID

Use the maximum signal as the summary statistic of a bin.

See Also:

Constant Field Values

BIN_BINARY_ID

protected static final int BIN_BINARY_ID

Use the presence of signal as the summary statistic of a bin.

See Also:

Constant Field Values

Constructor Detail

BinFileCreator

public BinFileCreator()

Method Detail

main

public static void main(java.lang.String[] argv)
                 throws java.lang.Exception

Throws:

java.lang.Exception