org.gersteinlab.act.io
Class GtfFilesReader

java.lang.Object
  org.gersteinlab.act.io.DataFilesReader
      org.gersteinlab.act.io.GtfFilesReader

public class GtfFilesReader
extends DataFilesReader

        This class defines a reader of data files in GTF format. See
        http://genome.ucsc.edu/FAQ/FAQformat.html for definition.
        

Field Summary

Fields inherited from class org.gersteinlab.act.io.DataFilesReader

br

Constructor Summary

GtfFilesReader(java.io.Reader rIn)
Create a new reader with source data from an input reader.

Method Summary

Interval

readInterval() Read the next interval from the reader.

Methods inherited from class org.gersteinlab.act.io.DataFilesReader

close, countIntervals, getReader, readIntervals, readIntervals, reset

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

GtfFilesReader

public GtfFilesReader(java.io.Reader rIn)

Create a new reader with source data from an input reader.

Parameters:

rIn - The input reader

Method Detail

readInterval

public Interval readInterval()
                      throws java.io.IOException

Read the next interval from the reader.

Specified by:

readInterval in class DataFilesReader

Returns:

The next interval
null if not more

Throws:

java.io.IOException