Uses of Class
org.gersteinlab.regulation.model.RateModel

Packages that use RateModel

org.gersteinlab.regulation
org.gersteinlab.regulation.model

Uses of RateModel in org.gersteinlab.regulation

Method parameters in org.gersteinlab.regulation with type arguments of type RateModel

double	TrajectoryProfile.getResidual(int j, int[][] ks, java.lang.Class<? extends RateModel> modelClass, double[] a0) Get the residual when using some genes k to predict the expression of a gene j based on the best fit of a rate model starting from an initial set of parameter values.
double	TrajectoryProfile.getResidual(int j, int[][] ks, java.lang.Class<? extends RateModel> modelClass, double[] aStar, int iter, double[] mins, double[] maxs) Get the residual when using some genes k to predict the expression of a gene j based on the best fit of a rate model starting from random parameter values.

Uses of RateModel in org.gersteinlab.regulation.model

Subclasses of RateModel in org.gersteinlab.regulation.model

class	LinearRateModel Providing methods for a rate model based on linear differential equations.
class	MultiplicativeRateModel Providing methods for a rate model based on multiplicative differential equations.
class	SigmoidalRateModel Providing methods for a rate model based on sigmoidal differential equations.

Constructor parameters in org.gersteinlab.regulation.model with type arguments of type RateModel

RateModelSqrDiff(double[] tIn, double[][] yjIn, double[][][][] yksIn, double[][][][] dykdtsIn, java.lang.Class<? extends RateModel> modelClass)
Create the function with the given set of points and target values and differentials.