blatParser.c File Reference

Module to parse psl BLAT output. More...

#include "format.h"
#include "log.h"
#include "linestream.h"
#include "common.h"
#include "blatParser.h"

Go to the source code of this file.

Functions
void	blatParser_deInit (void)
	Deinitialize the blatParser module.
void	blatParser_initFromFile (char *fileName)
	Initialize the blatParser module from file.
void	blatParser_initFromPipe (char *command)
	Initialize the blatParser module from pipe.
BlatQuery *	blatParser_nextQuery (void)
	Returns a pointer to next BlatQuery.

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Detailed Description

Module to parse psl BLAT output.

Author:

Lukas Habegger (lukas.habegger@yale.edu)

Definition in file blatParser.c.

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Function Documentation

void blatParser_initFromFile

(

char *

fileName

)

Initialize the blatParser module from file.

Parameters:

[in]

fileName

File name, use "-" to denote stdin

Definition at line 28 of file blatParser.c.

void blatParser_initFromPipe

(

char *

command

)

Initialize the blatParser module from pipe.

Parameters:

[in]

command

Command to be executed

Definition at line 45 of file blatParser.c.

BlatQuery* blatParser_nextQuery

(

void

)

Returns a pointer to next BlatQuery.

Precondition:

The module has been initialized using blatParser_init().

Definition at line 111 of file blatParser.c.