File List

Here is a list of all documented files with brief descriptions:

array.c [code]	Dynamic arrays
array.h [code]
bits.c [code]	Handle operations on arrays of bits
bits.h [code]
blastParser.c [code]	Module to parse tab-delimited BLAST output
blastParser.h [code]
blatParser.c [code]	Module to parse psl BLAT output
blatParser.h [code]
bowtieParser.c [code]	Module to parse bowtie output files
bowtieParser.h [code]
common.c [code]	Commonly used routines
common.h [code]
dlist.c [code]	Generic doubly-linked list routines
dlist.h [code]
elandMultiParser.c [code]	Module to parse eland_multi.txt files
elandMultiParser.h [code]
elandParser.c [code]	Module to parse eland_result.txt files
elandParser.h [code]
fasta.c [code]	Module to handle FASTA sequences
fasta.h [code]
format.c [code]	Collection of string handling utilities
format.h [code]
geneOntology.c [code]	Gene Ontology (GO) routines
geneOntology.h [code]
hlrmisc.c [code]	Miscelleanous routines
hlrmisc.h [code]
html.c [code]	Parse HTML CGI POST data and other CGI routines
html.h [code]
htmlLinker.c [code]	Module that generates links (URLs) to various sources
htmlLinker.h [code]
intervalFind.c [code]	Module to efficiently find intervals that overlap with a query interval
intervalFind.h [code]
linestream.c [code]	Read lines from a file, pipe or buffer
linestream.h [code]
log.c [code]	Basic logging service
log.h [code]
mainpage.h [code]
numUtil.c [code]	Numeric utilities
numUtil.h [code]
seq.c [code]	Module to handle DNA and protein sequences
seq.h [code]
stringUtil.c [code]	Additional string utilities
stringUtil.h [code]