elandParser.h File Reference

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Data Structures
struct	ElandQuery
	ElandQuery. More...
Functions
void	elandParser_deInit (void)
	Deinitialize the elandParser module.
void	elandParser_init (char *fileName)
	Initialize the elandParser module.
ElandQuery *	elandParser_nextQuery (void)
	Returns a pointer to next ElandQuery.

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Detailed Description

Author:

Lukas Habegger (lukas.habegger@yale.edu)

Definition in file elandParser.h.

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Function Documentation

void elandParser_init

(

char *

fileName

)

Initialize the elandParser module.

Parameters:

[in]

fileName

File name, use "-" to denote stdin

Definition at line 24 of file elandParser.c.

ElandQuery* elandParser_nextQuery

(

void

)

Returns a pointer to next ElandQuery.

Precondition:

The module has been initialized using elandParser_init(). Parse entries of the following format:

   >FC30H5TAA_100308:2:1:1647:1161	GCTTACATTTTTCCTCTCTACATTATC	U0	1	0	0	chr17.fa	8466296	F	..
   >FC30H5TAA_100308:2:1:1588:122	GAGTTAGCCTTGGGACCCCTACTTCTT	U0	1	0	0	chr3.fa	61525628	F	..
   >FC30H5TAA_100308:2:1:1642:123	GGTGAGAGCCGCGACGGGCTTTAGGCG	NM	0	0	0
   >FC30H5TAA_100308:2:1:1630:119	CCGCCATTGCCAGCCCCCAGCTGACGG	R2	0	0	2
   >FC30H5TAA_100308:2:1:1603:120	GCAAGATGAAGTGAAAGGTAAAGAATC	U1	0	1	1	chrM.fa	15277	R	..	26A
   

Definition at line 69 of file elandParser.c.