blastParser.c File Reference

Module to parse tab-delimited BLAST output. More...

#include "format.h"
#include "log.h"
#include "linestream.h"
#include "common.h"
#include "blastParser.h"

Go to the source code of this file.

Functions
void	blastParser_deInit (void)
	Deinitialize the blatParser module.
void	blastParser_initFromFile (char *fileName)
	Initialize the blastParser module from file.
void	blastParser_initFromPipe (char *command)
	Initialize the blastParser module from pipe.
BlastQuery *	blastParser_nextQuery (void)
	Get the next BlastQuery.

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Detailed Description

Module to parse tab-delimited BLAST output.

Author:

Lukas Habegger (lukas.habegger@yale.edu)

Definition in file blastParser.c.

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Function Documentation

void blastParser_initFromFile

(

char *

fileName

)

Initialize the blastParser module from file.

Parameters:

[in]

fileName

File name, use "-" to denote stdin

Definition at line 24 of file blastParser.c.

void blastParser_initFromPipe

(

char *

command

)

Initialize the blastParser module from pipe.

Parameters:

[in]

command

Command to be executed

Definition at line 38 of file blastParser.c.

BlastQuery* blastParser_nextQuery

(

void

)

Get the next BlastQuery.

Precondition:

The module has been initialized using blastParser_init().

Definition at line 103 of file blastParser.c.